{"id":"e192e8e6-c02b-4c13-bac1-3b33b06f55ec","title":"青藏高原高山植物小垫柳基因组组装数据集（2019）","title_en":"Genome Assembly of Alpine Species Salix Brachista on the Tibetan Plateau (2019)","serial":"","user_limit":"为尊重知识产权、保障数据作者的权益、扩展数据中心的服务、评估数据的应用潜力，请数据使用者在使用数据所产生的研究成果中（包括公开发表的论文、论著、数据产品和未公开发表的研究报告、数据产品等成果），明确注明数据来源和数据作者。对于转载（二次或多次发布）的数据，作者还须注明原始数据来源。","instructions":"Supplementary Information中的表格数据以论文中的命名方式命名，可用Microsoft Office中的Excel软件进行查看和编辑；\n基因组组装数据可用记事本打开查看。","description":"本数据集来源于论文：Chen, J.*#, Huang, Y.*#, Brachi, B.*#, Yun, Q.*#, Zhang, W., Lu, W., Li, H., Li, W., Sun, X., Wang, G., He, J., Zhou, Z., Chen, K., Ji, Y., Shi, M., Sun, W., Yang, Y.*, Zhang, R.#, Abbott, R. J.*, & Sun, H.* (2019). Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot. Nature Communications, 10(1), 5230. doi:10.1038/s41467-019-13128-y.\n本数据集包含青藏高原高山植物小垫柳Fasta格式的基因组组装文件，包括核苷酸（DNA）、核糖核酸（RNA）、蛋白质编码序列（Protein）序列数据，以及gff格式的基因组组装注释文件。\n组装等级：染色体级别\n基因组覆盖程度：全基因组\n参考基因组：是\n组装方法：SMARTdenovo 1.0; CANU 1.3\n测序方法及测序深度： PacBio, 125×; Illumina Hiseq X Ten, 43×; Oxford Nanopore Technologies, 74×\n基因组组装统计：\n基因组大小（bp）：339,587,529\nGC含量：34.15%\n染色体数量：19\n细胞器基因组数量：2\n基因组组装序列数量：30\n最大组装序列长度（bp）：39,688,537\n最小组装序列长度（bp）：57,080\n平均组装序列长度（bp）：11,319,584\n基因组组装序列N50（bp）：17,922,059\n基因组组装序列N90（bp）：13,388,179\n全基因组组装注释：\nProtein：30,209\ntRNA：784\nrRNA：118\nncRNA：671\n详细的注释信息请参见附件。\n本数据集中也包含文章中Supplementary Information中的表格数据，数据列表参见附件。\n基因组项目号为：GWHAAAA00000000（https://bigd.big.ac.cn/gwh/Assembly/663/show）。","doi":"10.11888/Ecolo.tpdc.270908","projection":"","language":"zh","share_type":"online","east":103.17,"west":95.69,"south":26.15,"north":30.71,"scale":null,"crs":null,"filesize":136.93,"share_policy":"a","ts_created":"2020-09-05T07:10:21.848843+08:00","doi_type":"拥有自主知识产权","ts_updated":"2021-04-19T13:07:51.656325+08:00","time_description":"","datas_group":3,"time_description_en":"","data_format":null,"project":[11],"specials":[],"cite":null,"review_status":5,"review_invite":[],"review_editor":{"id":42023,"last_login":"2022-03-24T09:37:33.507049+08:00","username":"yanmh","email":"yanmh@itpcas.ac.cn","is_active":true,"is_staff":true,"user_name":"闫梦还"},"data_sources":null,"temporal_resolution":"","spatial_resolution":"-","license":"Attribution 4.0 International (CC BY 4.0)","fund":[6],"subtopics":{"metadata":"e192e8e6-c02b-4c13-bac1-3b33b06f55ec","three_pole":null,"third_pole":"XDA20050203"},"username":"闫梦还","review_time":null,"protected_duration":null,"protected_describe":null,"is_important":true,"hit_count":3396}